Signature Greffe

DEG

Cellule B uniquement + FC = 0.25

Pseudo-Bulk - les databases (union DB papiers)

Liste

treat

Glm

Figures

Clustering

PCA

Top20 DEG

Volcano

treat

Glm

Heatmap

treat

Glm

Heatmap:Top

treat

Glm

Single-Cell

Liste

## Centering and scaling data matrix

Figure

PCA

Volcano

Heatmap

Intersection

Liste

Venn Diagram

Treat

Glm

Enrichissement

Pseudo-Bulk - les databases (union DB papiers)

Liste

EnrichPlot

MYC_TARGETS_V1

OXIDATIVE_PHOSPHORYLATION

TNFA_SIGNALING_VIA_NFKB

FATTY_ACID_METABOLISM

GLYCOLYSIS

ESTROGEN_RESPONSE_EARLY

REACTIVE_OXYGEN_SPECIES_PATHWAY

MTORC1_SIGNALING

INFLAMMATORY_RESPONSE

ANDROGEN_RESPONSE

MYC_TARGETS_V2

KRAS_SIGNALING_DN

PEROXISOME

ADIPOGENESIS

IL2_STAT5_SIGNALING

DNA_REPAIR

Single-cell

## [1] "Using sets of 1000 cells. Running 28 times."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."
## Setting parallel calculations through a SnowParam back-end
## with workers=10 and tasks=100.
## Estimating ssGSEA scores for 50 gene sets.
## [1] "Calculating ranks..."
## [1] "Calculating absolute values from ranks..."

Intersection

Liste

Diagram